publications | Neuroimaging in Intelligent Medicine Group

2025

Edge-aware feature aggregation network for polyp segmentation

Tao Zhou, Yizhe Zhang, Geng Chen, and 3 more authors

Machine Intelligence Research, 2025

@article{zhou2025edge,
  title = {Edge-aware feature aggregation network for polyp segmentation},
  author = {Zhou, Tao and Zhang, Yizhe and Chen, Geng and Zhou, Yi and Wu, Ye and Fan, Deng-Ping},
  journal = {Machine Intelligence Research},
  volume = {22},
  number = {1},
  pages = {101--116},
  year = {2025},
  publisher = {Springer Berlin Heidelberg Berlin/Heidelberg}
}

A survey on deep learning for polyp segmentation: Techniques, challenges and future trends

Jiaxin Mei, Tao Zhou, Kaiwen Huang, and 4 more authors

Visual Intelligence, 2025

Bib

@article{mei2025survey,
  title = {A survey on deep learning for polyp segmentation: Techniques, challenges and future trends},
  author = {Mei, Jiaxin and Zhou, Tao and Huang, Kaiwen and Zhang, Yizhe and Zhou, Yi and Wu, Ye and Fu, Huazhu},
  journal = {Visual Intelligence},
  volume = {3},
  number = {1},
  pages = {1},
  year = {2025},
  publisher = {Springer Nature Singapore Singapore}
}

DDEvENet: Evidence-based ensemble learning for uncertainty-aware brain parcellation using diffusion MRI

Chenjun Li, Dian Yang, Shun Yao, and 8 more authors

Computerized Medical Imaging and Graphics, 2025

Bib

@article{li2025ddevenet,
  title = {DDEvENet: Evidence-based ensemble learning for uncertainty-aware brain parcellation using diffusion MRI},
  author = {Li, Chenjun and Yang, Dian and Yao, Shun and Wang, Shuyue and Wu, Ye and Zhang, Le and Li, Qiannuo and Cho, Kang Ik Kevin and Seitz-Holland, Johanna and Ning, Lipeng and others},
  journal = {Computerized Medical Imaging and Graphics},
  volume = {120},
  pages = {102489},
  year = {2025},
  publisher = {Pergamon}
}

Revealing excitation-inhibition imbalance in Alzheimer’s disease using multiscale neural model inversion of resting-state functional MRI

Guoshi Li, Li-Ming Hsu, Ye Wu, and 3 more authors

Communications Medicine, 2025

Bib

@article{li2025revealing,
  title = {Revealing excitation-inhibition imbalance in Alzheimer’s disease using multiscale neural model inversion of resting-state functional MRI},
  author = {Li, Guoshi and Hsu, Li-Ming and Wu, Ye and Bozoki, Andrea C and Shih, Yen-Yu Ian and Yap, Pew-Thian},
  journal = {Communications Medicine},
  volume = {5},
  number = {1},
  pages = {17},
  year = {2025},
  publisher = {Nature Publishing Group UK London}
}

Soma and neurite density imaging detects brain microstructural impairments in amyotrophic lateral sclerosis

Jing-Yi Zeng, Hui-Wei Huang, Shao-Peng Zhuang, and 4 more authors

European Journal of Radiology, 2025

Bib

@article{zeng2025soma,
  title = {Soma and neurite density imaging detects brain microstructural impairments in amyotrophic lateral sclerosis},
  author = {Zeng, Jing-Yi and Huang, Hui-Wei and Zhuang, Shao-Peng and Wu, Ye and Chen, Sheng and Zou, Zhang-Yu and Chen, Hua-Jun},
  journal = {European Journal of Radiology},
  pages = {111981},
  year = {2025},
  publisher = {Elsevier}
}

Deep Learning-Based Diffusion MRI Tractography: Integrating Spatial and Anatomical Information

Yiqiong Yang, Yitian Yuan, Baoxing Ren, and 3 more authors

arXiv preprint arXiv:2503.03329, 2025

Bib

@article{yang2025deep,
  title = {Deep Learning-Based Diffusion MRI Tractography: Integrating Spatial and Anatomical Information},
  author = {Yang, Yiqiong and Yuan, Yitian and Ren, Baoxing and Wu, Ye and Feng, Yanqiu and Zhang, Xinyuan},
  journal = {arXiv preprint arXiv:2503.03329},
  year = {2025}
}

A Novel Streamline-based diffusion MRI Tractography Registration Method with Probabilistic Keypoint Detection

Junyi Wang, Mubai Du, Ye Wu, and 4 more authors

arXiv preprint arXiv:2503.02481, 2025

Bib

@article{wang2025novel,
  title = {A Novel Streamline-based diffusion MRI Tractography Registration Method with Probabilistic Keypoint Detection},
  author = {Wang, Junyi and Du, Mubai and Wu, Ye and Li, Yijie and Wells III, William M and O'Donnell, Lauren J and Zhang, Fan},
  journal = {arXiv preprint arXiv:2503.02481},
  year = {2025}
}

2024

Cross-contrast mutual fusion network for joint MRI reconstruction and super-resolution

Yue Ding, Tao Zhou, Lei Xiang, and 1 more author

Pattern Recognition, 2024

Bib

@article{ding2024cross,
  title = {Cross-contrast mutual fusion network for joint MRI reconstruction and super-resolution},
  author = {Ding, Yue and Zhou, Tao and Xiang, Lei and Wu, Ye},
  journal = {Pattern Recognition},
  volume = {154},
  pages = {110599},
  year = {2024},
  publisher = {Elsevier}
}

Voxelwise analysis of the central hearing pathway in senior dogs reveals changes associated with fractional lifespan

Chin-Chieh Yang, Pew-Thian Yap, Ye Wu, and 5 more authors

Scientific Reports, 2024

Bib

@article{yang2024voxelwise,
  title = {Voxelwise analysis of the central hearing pathway in senior dogs reveals changes associated with fractional lifespan},
  author = {Yang, Chin-Chieh and Yap, Pew-Thian and Wu, Ye and Zidan, Natalia and Fefer, Gilad and Nelson, Nathan C and Gruen, Margaret E and Olby, Natasha J},
  journal = {Scientific Reports},
  volume = {14},
  number = {1},
  pages = {18121},
  year = {2024},
  publisher = {Nature Publishing Group UK London}
}

Domain-interactive Contrastive Learning and Prototype-guided Self-training for Cross-domain Polyp Segmentation

Ziru Lu, Yizhe Zhang, Yi Zhou, and 2 more authors

IEEE Transactions on Medical Imaging, 2024

Bib

@article{lu2024domain,
  title = {Domain-interactive Contrastive Learning and Prototype-guided Self-training for Cross-domain Polyp Segmentation},
  author = {Lu, Ziru and Zhang, Yizhe and Zhou, Yi and Wu, Ye and Zhou, Tao},
  journal = {IEEE Transactions on Medical Imaging},
  year = {2024},
  publisher = {IEEE}
}

MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI

Nancy R Newlin, Kurt Schilling, Serge Koudoro, and 8 more authors

arXiv preprint arXiv:2411.09618, 2024

Bib

@article{newlin2024miccai,
  title = {MICCAI-CDMRI 2023 QuantConn Challenge Findings on Achieving Robust Quantitative Connectivity through Harmonized Preprocessing of Diffusion MRI},
  author = {Newlin, Nancy R and Schilling, Kurt and Koudoro, Serge and Chandio, Bramsh Qamar and Kanakaraj, Praitayini and Moyer, Daniel and Kelly, Claire E and Genc, Sila and Chen, Jian and Yang, Joseph Yuan-Mou and others},
  journal = {arXiv preprint arXiv:2411.09618},
  year = {2024}
}

Data Tells the Truth: A Knowledge Distillation Method for Genomic Survival Analysis by Handling Censoring

Xiu-Shen Wei, He-Yang Xu, Ye Wu, and 4 more authors

Fundamental Research, 2024

Bib

@article{wei2024data,
  title = {Data Tells the Truth: A Knowledge Distillation Method for Genomic Survival Analysis by Handling Censoring},
  author = {Wei, Xiu-Shen and Xu, He-Yang and Wu, Ye and Liu, Xiaoming and Gao, Ruru and Liu, Jiacheng and Du, Bowen},
  journal = {Fundamental Research},
  year = {2024},
  publisher = {Elsevier}
}

Spherical harmonics-based deep learning achieves generalized and accurate diffusion tensor imaging

Yunwei Chen, Jialong Li, Qiqi Lu, and 6 more authors

IEEE Journal of Biomedical and Health Informatics, 2024

Bib

@article{chen2024spherical,
  title = {Spherical harmonics-based deep learning achieves generalized and accurate diffusion tensor imaging},
  author = {Chen, Yunwei and Li, Jialong and Lu, Qiqi and Wu, Ye and Liu, Xiaoming and Gao, Yuanyuan and Feng, Yanqiu and Zhang, Zhicheng and Zhang, Xinyuan},
  journal = {IEEE Journal of Biomedical and Health Informatics},
  year = {2024},
  publisher = {IEEE}
}

Reliable Deep Diffusion Tensor Estimation: Rethinking the Power of Data-Driven Optimization Routine

Jialong Li, Zhicheng Zhang, Yunwei Chen, and 6 more authors

arXiv preprint arXiv:2409.02492, 2024

Bib

@article{li2024reliable,
  title = {Reliable Deep Diffusion Tensor Estimation: Rethinking the Power of Data-Driven Optimization Routine},
  author = {Li, Jialong and Zhang, Zhicheng and Chen, Yunwei and Lu, Qiqi and Wu, Ye and Liu, Xiaoming and Feng, QianJin and Feng, Yanqiu and Zhang, Xinyuan},
  journal = {arXiv preprint arXiv:2409.02492},
  year = {2024}
}

TextPolyp: Point-Supervised Polyp Segmentation with Text Cues

Yiming Zhao, Yi Zhou, Yizhe Zhang, and 2 more authors

In International Conference on Medical Image Computing and Computer-Assisted Intervention, 2024

Bib

@inproceedings{zhao2024textpolyp,
  title = {TextPolyp: Point-Supervised Polyp Segmentation with Text Cues},
  author = {Zhao, Yiming and Zhou, Yi and Zhang, Yizhe and Wu, Ye and Zhou, Tao},
  booktitle = {International Conference on Medical Image Computing and Computer-Assisted Intervention},
  pages = {711--722},
  year = {2024},
  organization = {Springer}
}

Advanced Diffusion MRI in Developing Brain

Ye Wu, Lanxiang He, Xinyuan Zhang, and 1 more author

2024

Bib

@article{wu2024advanced,
  title = {Advanced Diffusion MRI in Developing Brain},
  author = {Wu, Ye and He, Lanxiang and Zhang, Xinyuan and Zhang, Fan},
  year = {2024},
  publisher = {IntechOpen}
}

Spherical-deconvolution informed filtering of tractograms changes laterality of structural connectome

Yifei He, Yoonmi Hong, and Ye Wu

NeuroImage, 2024

Bib

@article{he2024spherical,
  title = {Spherical-deconvolution informed filtering of tractograms changes laterality of structural connectome},
  author = {He, Yifei and Hong, Yoonmi and Wu, Ye},
  journal = {NeuroImage},
  volume = {303},
  pages = {120904},
  year = {2024},
  publisher = {Academic Press}
}

Combining Segment Anything Model with Domain-Specific Knowledge for Semi-Supervised Learning in Medical Image Segmentation

Yizhe Zhang, Tao Zhou, Ye Wu, and 2 more authors

In Chinese Conference on Pattern Recognition and Computer Vision (PRCV), 2024

Bib

@inproceedings{zhang2024combining,
  title = {Combining Segment Anything Model with Domain-Specific Knowledge for Semi-Supervised Learning in Medical Image Segmentation},
  author = {Zhang, Yizhe and Zhou, Tao and Wu, Ye and Gu, Pengfei and Wang, Shuo},
  booktitle = {Chinese Conference on Pattern Recognition and Computer Vision (PRCV)},
  pages = {343--357},
  year = {2024},
  organization = {Springer}
}

FibGrid: Characterizing Anatomical Pathways in Hypergrid for Direct Tract Segmentation

Yu Xie, Yazhe Zhai, Yifei He, and 3 more authors

In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024

Bib

@inproceedings{xie2024fibgrid,
  title = {FibGrid: Characterizing Anatomical Pathways in Hypergrid for Direct Tract Segmentation},
  author = {Xie, Yu and Zhai, Yazhe and He, Yifei and Yu, Jiahao and Qin, Jiaolong and Wu, Ye},
  booktitle = {2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
  pages = {128--133},
  year = {2024},
  organization = {IEEE}
}

Jointly Estimation of Microstructure Maps Across Acquisition Protocols

Tenglong Wang, Jiahao Yu, Yiang Pan, and 3 more authors

In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024

Bib

@inproceedings{wang2024jointly,
  title = {Jointly Estimation of Microstructure Maps Across Acquisition Protocols},
  author = {Wang, Tenglong and Yu, Jiahao and Pan, Yiang and He, Jianzhong and He, Yifei and Wu, Ye},
  booktitle = {2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)},
  pages = {1--6},
  year = {2024},
  organization = {IEEE}
}